PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_531_iso_6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 141aa    MW: 15882.5 Da    PI: 5.0133
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_531_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.2e-082469346
                                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
                     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                                        +WT+ E + + +a + + ++   +W ++a +++ g+t  +++  ++ 
  cra_locus_531_iso_6_len_1873_ver_3 24 KWTPAENKAFENALAVFDKDtpdRWQRVADMVP-GKTVLDVIRQYRE 69
                                        8********************************.*******999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.8E-92173IPR001005SANT/Myb domain
SuperFamilySSF466895.23E-122378IPR009057Homeodomain-like
PfamPF002497.9E-72469IPR001005SANT/Myb domain
CDDcd001677.13E-72470No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MEILSPSSYS SNSSWLYEES KSTKWTPAEN KAFENALAVF DKDTPDRWQR VADMVPGKTV  60
LDVIRQYREL EDDVSSIEAG LVPLPGYNTT SPFTLEWGNG HGFDGLKINS YAPTGKRSSS  120
TRPSSDHERK KGVPWTEEEH K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1925901176RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896949.15e-72PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H76e-68DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A068UL317e-74A0A068UL31_COFCA; Uncharacterized protein
STRINGSolyc06g076770.2.15e-67(Solanum lycopersicum)
STRINGPGSC0003DMT4000780295e-67(Solanum tuberosum)